Published dataset

These dataset combine data from multiple of our papers.

• Ribosome profiling

  • Ribo-seq and mRNA-seq
  • Translation rate
  • Translation efficiency
  • Genome tracks

Published data from our recent papers

• Vejnar et al. Genome wide analysis of 3’-UTR sequence elements and proteins regulating mRNA stability during maternal-to-zygotic in zebrafish

  Genome Research 2019

  • mRNA-seq embryonic development timecourse
    • Gene counts (RPKM)
    • Trackhub
  • iCLIP trackhub
  • Source code (FIRE, Random Forest model)

• Beaudoin et al. mRNA structure dynamics identifies embryonic gene regulatory programs.

  Nature Structural Molecular Biology 2018

  • RNA structure DMS-seq
  • Ribo-seq
  • mRNA-seq

• Fernandez et al. RES complex is associated with intron definition and required for zebrafish early embryogenesis

  PLOS Genetics 2018

  • mRNA-seq snip1, rbmx2, bud13 KO

Download

All data described above is publicly available at https://data.giraldezlab.org/pub.