Published data from our recent papers

Vejnar et al. Genome wide analysis of 3’-UTR sequence elements and proteins regulating mRNA stability during maternal-to-zygotic in zebrafish

Genome Research 2019
- mRNA-seq embryonic development timecourse
  - Gene counts (RPKM)
  - Trackhub
- iCLIP trackhub
- Source code (FIRE, Random Forest model)
Beaudoin et al. mRNA structure dynamics identifies embryonic gene regulatory programs.

Nature Structural Molecular Biology 2018
- RNA structure DMS-seq
- Ribo-seq
- mRNA-seq
Fernandez et al. RES complex is associated with intron definition and required for zebrafish early embryogenesis

PLOS Genetics 2018
- mRNA-seq snip1, rbmx2, bud13 KO

Download

All data described above is publicly available at https://data.giraldezlab.org/pub.