Ribosome profiling

We provide translation rates and efficiencies on updated Ensembl annotations.

RPKM

File Description Type
rpf_mrna_giraldez_rpkm5_ensembl92_v8.csv.xz Main table combining all of our published Ribo-seq data RPKM (up to 5 matches)
rpf_mrna_giraldez_count5_ensembl92_v8.csv.xz Main table combining all of our published Ribo-seq data Count (up to 5 matches)
rpf_mrna_giraldez_publications_v8.csv.xz Citations and SRA IDs

Citing

This dataset combines data from multiple papers. Please cite each manuscript which published the sample you used by referring to rpf_mrna_giraldez_publications_v8.csv.xz table to get the sample<->manuscript correspondence.

Raw data

Raw data is available for download at SRA. Please refer to rpf_mrna_giraldez_publications_v8.csv.xz to get the SRR references to download.

How to decompress the files