Ribosome profiling: ribo-seq timecourse

We provide:

Citing

This dataset combines data from multiple publications:

Publication for each sample (i.e. sample<->manuscript correspondence) is available here: rpf_mrna_giraldez_publications_v8.csv.xz.

RPKM

File Description Type
rpf_mrna_giraldez_rpkm5_ensembl92_v8.csv.xz Main table combining all of our published Ribo-seq data RPKM (up to 5 matches)
rpf_mrna_giraldez_count5_ensembl92_v8.csv.xz Main table combining all of our published Ribo-seq data Count (up to 5 matches)
rpf_mrna_giraldez_publications_v8.csv.xz Citations and SRA IDs

Raw data

Raw data is available for download at SRA. Please refer to rpf_mrna_giraldez_publications_v8.csv.xz to get the SRR references to download.

How to decompress the files

Genome tracks

Ribo-seq trackhub