Count tables are stored as .json:
{'run_name' : {'reporter_1 : 5,
'reporter_2 : 80,
'reporter_3 : 100,
....}}
Counts reflect unique raw counts for each reporter. Reporters with 0 counts are ommited from runs.
| Library | Reporter fasta | Experiment Name | Raw counts |
|---|---|---|---|
| kozak | kozak_reporters.fa | ntrap_fish_kozak | ntrap_kozak_counts.json |
| utr5_fish | utr5_fish_reporters.fa | ntrap_utr5_fish_pa_sv40 | ntrap_utr5_fish_pa_sv40_counts.json |
| ntrap_utr5_hek293t | ntrap_utr5_hek293t_counts.json | ||
| polysome_utr5_hek293t | polysome_hek293t_counts.json | ||
| validation | validation_reporters.fa | ntrap_valid_fish | ntrap_validation_counts.json |
| muliframe_pilot | multiframe_reporters.fa | ntrap_multiframe_pilot | ntrap_multiframe_counts.json |
Note: For validation library only the kmer_ and ntrap_spike_ reporters were analyzed.
| Experiment name | Sample name | Run name | Run type | Replicate id |
|---|---|---|---|---|
| ntrap_fish_kozak | kozak_6h | ESF2-ACTTGA | flag_pulldown | B1 |
| ESF4-ACTTGA | input | B1 | ||
| ESF2-CTAGCT | flag_pulldown | B2 | ||
| ESF4-CTAGCT | input | B2 | ||
| ntrap_utr5_fish_pa_sv40 | pa_2hpf | AGR003829 | flag_pulldown | B1 |
| AGR003825 | input | B1 | ||
| AGR003830 | flag_pulldown | B2 | ||
| AGR003826 | input | B2 | ||
| pa_6hpf | AGR003837 | flag_pulldown | B1 | |
| AGR003833 | input | B1 | ||
| AGR003838 | flag_pulldown | B2 | ||
| AGR003834 | input | B2 | ||
| sv40_2hpf | AGR003829 | flag_pulldown | B1 | |
| AGR003825 | input | B1 | ||
| AGR003830 | flag_pulldown | B2 | ||
| AGR003826 | input | B2 | ||
| pa_6hpf | AGR003837 | flag_pulldown | B1 | |
| AGR003833 | input | B1 | ||
| AGR003838 | flag_pulldown | B2 | ||
| AGR003834 | input | B2 | ||
| ntrap_utr5_hek293t | hek293t_12h | AGR003973 | flag_pulldown | B1 |
| AGR003969 | input | B1 | ||
| AGR003974 | flag_pulldown | B2 | ||
| AGR003970 | input | B2 | ||
| AGR003975 | flag_pulldown | B3 | ||
| AGR003971 | input | B3 | ||
| AGR003976 | flag_pulldown | B4 | ||
| AGR003972 | input | B4 | ||
| polysome_utr5_hek293t | hek293t_poly | AGR004793 | Fraction 11 | B1 |
| AGR004795 | Fraction 12 | B1 | ||
| AGR004801 | Fraction 15 | B1 | ||
| AGR004803 | Fraction 16 | B1 | ||
| AGR004805 | Fraction 17 | B1 | ||
| AGR004807 | Fraction 18 | B1 | ||
| AGR004809 | Fraction 19 | B1 | ||
| AGR004811 | Fraction 20 | B1 | ||
| AGR004813 | Fraction 21 | B1 | ||
| AGR004815 | Fraction 22 | B1 | ||
| AGR004817 | Fraction 23 | B1 | ||
| AGR004819 | Fraction 24 | B1 | ||
| AGR004821 | Fraction 25 | B1 | ||
| AGR004823 | Fraction 26 | B1 | ||
| ntrap_valid_fish | valid_pa_2hpf | AGR004001 | flag_pulldown | B1 |
| AGR003995 | input | B1 | ||
| valid_pa_6hpf | AGR004003 | flag_pulldown | B1 | |
| AGR003997 | input | B1 | ||
| ntrap_multiframe_pilot | mf_fish_test | AGR004938 | input | B1 |
| AGR004932 | flag_pulldown | B1 | ||
| AGR004934 | ha_pulldown | B1 | ||
| AGR004936 | myc_pulldown | B1 | ||
| AGR004939 | input | B2 | ||
| AGR004933 | flag_pulldown | B2 | ||
| AGR004935 | ha_pulldown | B2 | ||
| AGR004937 | myc_pulldown | B2 |